SimVascular is an open source integrated software suite for image-based cardiovascular modeling and patient-specific simulation, providing a complete pipeline from medical image visualization, segmentation, 3D model construction, meshing, to blood flow simulation and hemodynamics analysis. It is recommended that new users to SimVascular first go through SimVascular Documentation Website to understand the workflow in SimVascular. With SimVascular, users can create input/data files for simulation and upload to the gateway.
Sim Vascular DocumentationOur gateway provides access to high performance computer clusters for SimVascular users who would like to run simulation with super computing (10x~ faster than desktop). The svSolver needed for running simulation is already setup and ready to use from the computer clusters. Through the gateway, SimVascular users just simply create simualtion jobs, upload input/data files, launch simualtion, and download results once the simulation is finished. There is no hassle for users to compile or setup svSolver. Detailed instructions about how to use the gateway are provided here.
Gateway InstructionsAtefeh Razavi, Shagun Sachdeva, Peter C Frommelt, and John F LaDisa Jr. 2021.
In Seminars in Thoracic and Cardiovascular Surgery, Vol. 33. Elsevier, 155–167.
Nathan M Wilson, Suresh Marru, Eroma Abeysinghe, Marcus A Christie, Gabriel D Maher, Adam R Updegrove, Marlon Pierce, and Alison L Marsden. 2018.
In Proceedings of the Practice and Experience on Advanced Research Computing. 1–4.
Arash Ghorbanniahassankiadeh, David S Marks, and John F LaDisa. 2021.
Journal of Biomechanical Engineering 143, 5 (2021).